Emily Alsentzer

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Bio_ClinicalBERT

Emily Alsentzer

The Publicly Available Clinical BERT Embeddings paper contains four unique clinicalBERT models: initialized with BERT-Base (casedL-12H-768A-12) or BioBERT (BioBERT-Base v1.0 + PubMed 200K + PMC 270K) & trained on either all MIMIC notes or only discharge summaries. This model card describes the Bio+Clinical BERT model, which was initialized from BioBERT & trained on all MIMIC notes. The BioClinicalBERT model was trained on all notes from MIMIC III, a database containing electronic health records from ICU patients at the Beth Israel Hospital in Boston, MA. For more details on MIMIC, see here. All notes from the NOTEEVENTS table were included (~880M words). Each note in MIMIC was first split…

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Bio_Discharge_Summary_BERT

Emily Alsentzer

The Publicly Available Clinical BERT Embeddings paper contains four unique clinicalBERT models: initialized with BERT-Base (casedL-12H-768A-12) or BioBERT (BioBERT-Base v1.0 + PubMed 200K + PMC 270K) & trained on either all MIMIC notes or only discharge summaries. This model card describes the Bio+Discharge Summary BERT model, which was initialized from BioBERT & trained on only discharge summaries from MIMIC. The BioDischargeSummaryBERT model was trained on all discharge summaries from MIMIC III, a database containing electronic health records from ICU patients at the Beth Israel Hospital in Boston, MA. For more details on MIMIC, see here. All notes from the NOTEEVENTS table were included…