ScVI is a variational inference model for single-cell RNA-seq data that can learn an underlying latent space, integrate technical batches and impute dropouts. The learned low-dimensional latent representation of the data can be used for visualization and clustering. scVI takes as input a scRNA-seq gene expression matrix with cells and genes. We provide an extensive user guide. - See our original manuscript for further details of the model: - See our manuscript on scvi-hub how to leverage pre-trained models. This model can be used for fine tuning on new data using our Arches framework: scVI model trained on synthetic IID data and uploaded with the minified data. We provide here key…
Open weights
cc-by-4.0
scvi-tools
ScVI is a variational inference model for single-cell RNA-seq data that can learn an underlying latent space, integrate technical batches and impute dropouts. The learned low-dimensional latent representation of the data can be used for visualization and clustering. scVI takes as input a scRNA-seq gene expression matrix with cells and genes. We provide an extensive user guide. - See our original manuscript for further details of the model: - See our manuscript on scvi-hub how to leverage pre-trained models. This model can be used for fine tuning on new data using our Arches framework: scVI model trained on synthetic IID data and uploaded with no data. We provide here key performance metrics…
Open weights
cc-by-4.0
scvi-tools
ScVI is a variational inference model for single-cell RNA-seq data that can learn an underlying latent space, integrate technical batches and impute dropouts. The learned low-dimensional latent representation of the data can be used for visualization and clustering. scVI takes as input a scRNA-seq gene expression matrix with cells and genes. We provide an extensive user guide. - See our original manuscript for further details of the model: - See our manuscript on scvi-hub how to leverage pre-trained models. This model can be used for fine tuning on new data using our Arches framework: scVI model trained on synthetic IID data and uploaded with the full training data. We provide here key…
Open weights
cc-by-4.0
scvi-tools
