OpenMed-NER-GenomicDetect-PubMed-109M

Model · Token classification

OpenMed-NER-AnatomyDetect-ElectraMed-109M

OpenMed

Specialized model for Anatomical Entity Recognition - Anatomical structures and body parts This model is a state-of-the-art fine-tuned transformer engineered to deliver enterprise-grade accuracy for anatomical entity recognition - anatomical structures and body parts. This specialized model excels at identifying and extracting biomedical entities from clinical texts, research papers, and healthcare documents, enabling applications such as drug interaction detection, medication extraction from patient records, adverse event monitoring, literature mining for drug discovery, and biomedical knowledge graph construction with production-ready reliability for clinical and research applications.…

Model · Token classification

OpenMed-NER-SpeciesDetect-ElectraMed-109M

OpenMed

Specialized model for Species Entity Recognition - Species and organism names This model is a state-of-the-art fine-tuned transformer engineered to deliver enterprise-grade accuracy for species entity recognition - species and organism names. This specialized model excels at identifying and extracting biomedical entities from clinical texts, research papers, and healthcare documents, enabling applications such as drug interaction detection, medication extraction from patient records, adverse event monitoring, literature mining for drug discovery, and biomedical knowledge graph construction with production-ready reliability for clinical and research applications. This model can identify and…

Model · Token classification

OpenMed-NER-DiseaseDetect-ElectraMed-109M

OpenMed

Specialized model for Disease Entity Recognition - Disease entities from the BC5CDR dataset This model is a state-of-the-art fine-tuned transformer engineered to deliver enterprise-grade accuracy for disease entity recognition - disease entities from the bc5cdr dataset. This specialized model excels at identifying and extracting biomedical entities from clinical texts, research papers, and healthcare documents, enabling applications such as drug interaction detection, medication extraction from patient records, adverse event monitoring, literature mining for drug discovery, and biomedical knowledge graph construction with production-ready reliability for clinical and research applications.…

Model · Token classification

OpenMed-NER-OrganismDetect-BioMed-109M

OpenMed

Specialized model for Species Entity Recognition - Species names from the Species-800 dataset This model is a state-of-the-art fine-tuned transformer engineered to deliver enterprise-grade accuracy for species entity recognition - species names from the species-800 dataset. This specialized model excels at identifying and extracting biomedical entities from clinical texts, research papers, and healthcare documents, enabling applications such as drug interaction detection, medication extraction from patient records, adverse event monitoring, literature mining for drug discovery, and biomedical knowledge graph construction with production-ready reliability for clinical and research…

If my open source models have been useful to you, please consider supporting me in building small, useful AI models for everyone (and help me afford med school / help out my parents financially). Thanks! bert-base-NER is a fine-tuned BERT model that is ready to use for Named Entity Recognition and achieves state-of-the-art performance for the NER task. It has been trained to recognize four types of entities: location (LOC), organizations (ORG), person (PER) and Miscellaneous (MISC). Specifically, this model is a bert-base-cased model that was fine-tuned on the English version of the standard CoNLL-2003 Named Entity Recognition dataset. If you'd like to use a larger BERT-large model…

Model · Token classification

span-marker-bert-base-uncased-acronyms

Tom Aarsen

This is a SpanMarker model trained on the Acronym Identification dataset that can be used for Named Entity Recognition. This SpanMarker model uses bert-base-uncased as the underlying encoder. See train.py for the training script. Is your data always capitalized correctly? Then consider using the cased variant of this model instead for better performance: tomaarsen/span-marker-bert-base-acronyms. You can finetune this model on your own dataset. - learningrate: 5e-05 - trainbatchsize: 32 - evalbatchsize: 32 - lrschedulertype: linear - lrschedulerwarmupratio: 0.1 - numepochs: 2 Carbon emissions were measured using CodeCarbon.