Model · Token classification
OpenMed
Specialized model for Biomedical Entity Recognition - Proteins, DNA, RNA, cell lines, and cell types This model is a state-of-the-art fine-tuned transformer engineered to deliver enterprise-grade accuracy for biomedical entity recognition - proteins, dna, rna, cell lines, and cell types. This specialized model excels at identifying and extracting biomedical entities from clinical texts, research papers, and healthcare documents, enabling applications such as drug interaction detection, medication extraction from patient records, adverse event monitoring, literature mining for drug discovery, and biomedical knowledge graph construction with production-ready reliability for clinical and…
Open weights
apache-2.0
124M parameters
514 tokens
transformers
Model · Token classification
OpenMed
Specialized model for Disease Entity Recognition - Disease entities from the NCBI dataset This model is a state-of-the-art fine-tuned transformer engineered to deliver enterprise-grade accuracy for disease entity recognition - disease entities from the ncbi dataset. This specialized model excels at identifying and extracting biomedical entities from clinical texts, research papers, and healthcare documents, enabling applications such as drug interaction detection, medication extraction from patient records, adverse event monitoring, literature mining for drug discovery, and biomedical knowledge graph construction with production-ready reliability for clinical and research applications. This…
Open weights
apache-2.0
135M parameters
512 tokens
transformers
This is a SpanMarker model trained on the Acronym Identification dataset that can be used for Named Entity Recognition. This SpanMarker model uses bert-base-uncased as the underlying encoder. See train.py for the training script. Is your data always capitalized correctly? Then consider using the cased variant of this model instead for better performance: tomaarsen/span-marker-bert-base-acronyms. You can finetune this model on your own dataset. - learningrate: 5e-05 - trainbatchsize: 32 - evalbatchsize: 32 - lrschedulertype: linear - lrschedulerwarmupratio: 0.1 - numepochs: 2 Carbon emissions were measured using CodeCarbon.
Open weights
apache-2.0
109M parameters
span-marker
Model · Token classification
OpenMed
Specialized model for Anatomical Entity Recognition - Anatomical structures and body parts This model is a state-of-the-art fine-tuned transformer engineered to deliver enterprise-grade accuracy for anatomical entity recognition - anatomical structures and body parts. This specialized model excels at identifying and extracting biomedical entities from clinical texts, research papers, and healthcare documents, enabling applications such as drug interaction detection, medication extraction from patient records, adverse event monitoring, literature mining for drug discovery, and biomedical knowledge graph construction with production-ready reliability for clinical and research applications.…
Open weights
apache-2.0
109M parameters
512 tokens
transformers
Model · Token classification
OpenMed
Specialized model for Species Entity Recognition - Species and organism names This model is a state-of-the-art fine-tuned transformer engineered to deliver enterprise-grade accuracy for species entity recognition - species and organism names. This specialized model excels at identifying and extracting biomedical entities from clinical texts, research papers, and healthcare documents, enabling applications such as drug interaction detection, medication extraction from patient records, adverse event monitoring, literature mining for drug discovery, and biomedical knowledge graph construction with production-ready reliability for clinical and research applications. This model can identify and…
Open weights
apache-2.0
109M parameters
512 tokens
transformers
Model · Token classification
OpenMed
Specialized model for Gene Entity Recognition - Gene-related entities This model is a state-of-the-art fine-tuned transformer engineered to deliver enterprise-grade accuracy for gene entity recognition - gene-related entities. This specialized model excels at identifying and extracting biomedical entities from clinical texts, research papers, and healthcare documents, enabling applications such as drug interaction detection, medication extraction from patient records, adverse event monitoring, literature mining for drug discovery, and biomedical knowledge graph construction with production-ready reliability for clinical and research applications. This model can identify and classify the…
Open weights
apache-2.0
109M parameters
512 tokens
transformers
