A pip-installable Python package that provides a YAML-based dataset manifest registry for bioinformatics agents. It also exposes a FastMCP server so agent processes can query dataset metadata over MCP. - Discovers and indexes dataset manifests (one YAML file per dataset) at import time - Validates manifests against a typed schema (DatasetManifest) - Ships with the Moffitt et al. 2015 PDAC bulk microarray dataset as the first entry - Exposes registry tools over MCP via a FastMCP server Or from within the repo directory: The server exposes four MCP tools: 1. Create a YAML file in biodataregistry/manifests/.yaml. 2. The file must contain at minimum: datasetid, title, accession, organism…
Independent publisher
Anne Voigt
anne-voigt
Models in Library1
Datasets in Library0
Models on Hugging Face1
Followers1
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