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Open-weight model · Token classification

OpenMed-NER-OrganismDetect-BioPatient-108M

by OpenMed OpenMed/OpenMed-NER-OrganismDetect-BioPatient-108M

OpenMed-NER-OrganismDetect-BioPatient-108M is an open-weight model for token classification from OpenMed, released under Apache License 2.0. It has 108M parameters and a 512-token context. At 16-bit it needs about 0.3 GB of GPU memory, which fits on 1x MI300X from $1.85 an hour, at the lowest prices in the SAVRN Index. It draws 197.2k downloads a month.

Specialized model for Species Entity Recognition - Species names from the Species-800 dataset This model is a state-of-the-art fine-tuned transformer engineered to deliver enterprise-grade accuracy for species entity recognition - species names from the…

Parameters108M
Context512
Weights215.5 MB
Licenseapache-2.0
AccessOpen weights
Monthly Downloads197.2k

Runs On

What it takes to serve OpenMed-NER-OrganismDetect-BioPatient-108M (108M parameters): the memory its weights need at each precision, and the cheapest way to rent enough data-center GPUs to hold them.

PrecisionWeightsMemory neededCheapest setupPer hourAlso fits
16-bit 0.2 GB 0.3 GB 1x MI300X (192 GB)
Vultr
$1.85 1x H100 $1.99 · 1x MI325X $2.00
8-bit 0.1 GB 0.1 GB 1x MI300X (192 GB)
Vultr
$1.85 1x H100 $1.99 · 1x MI325X $2.00
4-bit 0.1 GB 0.1 GB 1x MI300X (192 GB)
Vultr
$1.85 1x H100 $1.99 · 1x MI325X $2.00

Memory is the weights at that precision plus 20% for the runtime and a short context; a long context needs more. Prices are the lowest on-demand hourly rates in the SAVRN Index, read Oct 13, 2026.

OpenMed-NER-OrganismDetect-BioPatient-108M on every accelerator the SAVRN Index prices, at every precision

Model Card

By OpenMed, published under apache-2.0, revision bc18d6d72f86.

Specialized model for Species Entity Recognition - Species names from the Species-800 dataset

Model Overview

This model is a state-of-the-art fine-tuned transformer engineered to deliver enterprise-grade accuracy for species entity recognition - species names from the species-800 dataset. This specialized model excels at identifying and extracting biomedical entities from clinical texts, research papers, and healthcare documents, enabling applications such as drug interaction detection, medication extraction from patient records, adverse event monitoring, literature mining for drug discovery, and biomedical knowledge graph construction with production-ready reliability for clinical and research applications.

Key Features

  • High Precision: Optimized for biomedical entity recognition
  • Domain-Specific: Trained on curated SPECIES800 dataset
  • Production-Ready: Validated on clinical benchmarks
  • Easy Integration: Compatible with Hugging Face Transformers ecosystem

Supported Entity Types

This model can identify and classify the following biomedical entities:

  • B-SPECIES
  • I-SPECIES

Dataset

Species800 is a corpus for species recognition and taxonomy classification in biomedical texts.

Read the full model card (1,084 words)

Configuration

Architecture
BertForTokenClassification
Context length (tokens)
512
Layers
12
Hidden size
768
Feed-forward size
3,072
Attention heads
12
Vocabulary size
28,996
Stored precision
bfloat16
Model type
bert

Identity and Version

Repository
OpenMed/OpenMed-NER-OrganismDetect-BioPatient-108M
Publisher
OpenMed
Task
Token classification
Modality
Text
Library
transformers
Parameters
108M parameters
Languages
en
Revision
bc18d6d72f8687d0a52290ef45f31d25ee471438
First published
2025-07-16
Last updated
2025-08-05

Files and Weights

10 files, 216.9 MB in total. The weights are 1 file totalling 215.5 MB in safetensors.

Weights1 file · 215.5 MB
Configuration3 files · 1.1 KB
Tokenizer3 files · 883.9 KB
Documentation1 file · 11.6 KB
Other1 file · 497.0 KB
Repository1 file · 1.6 KB
Every file
FileTypeSizeSHA-256
model.safetensorsWeights215.5 MB 52786260f40d
config.jsonConfiguration750 B —
special_tokens_map.jsonConfiguration125 B —
test_results.jsonConfiguration197 B —
README.mdDocumentation11.6 KB —
openmed_vs_sota_grouped_bars.pngOther497.0 KB 626b37d9b20c
.gitattributesRepository1.6 KB —
tokenizer.jsonTokenizer669.2 KB —
tokenizer_config.jsonTokenizer1.3 KB —
vocab.txtTokenizer213.4 KB —

License and Download

License
apache-2.0
Access
Open weights, no gate
Download size
215.5 MB
Download from OpenMed

Released by OpenMed through its official repository on Hugging Face. Read the license.

Built From

Memory Requirements

PrecisionWeights in memory
As published215.5 MB
16-bit0.2 GB
8-bit0.1 GB
4-bit0.1 GB

Weights only, from the published parameter count; the key-value cache and runtime add to this.

Questions About OpenMed-NER-OrganismDetect-BioPatient-108M

How much GPU memory does OpenMed-NER-OrganismDetect-BioPatient-108M need?

About 0.3 GB at 16-bit and 0.1 GB at 4-bit: the weights (108M parameters) plus a working margin. A long context needs more.

What is the cheapest GPU to run OpenMed-NER-OrganismDetect-BioPatient-108M on?

At 16-bit, 1x MI300X from $1.85 an hour; at 4-bit, 1x MI300X from $1.85 an hour, at the lowest on-demand prices the SAVRN Index lists.

Can I use OpenMed-NER-OrganismDetect-BioPatient-108M commercially?

Yes. OpenMed-NER-OrganismDetect-BioPatient-108M is released under Apache License 2.0. The Apache License 2.0 is a permissive open-source license. It permits commercial use, modification and redistribution. It requires keeping the license and copyright notices and any NOTICE file, stating significant changes, and it includes an express patent grant from contributors.

What is OpenMed-NER-OrganismDetect-BioPatient-108M's context length?

512 tokens, from the maximum position embeddings in its published configuration.

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